Source Files

• lib/miga.rb
• lib/miga/cli.rb
• lib/miga/cli/action.rb
• lib/miga/cli/action/about.rb
• lib/miga/cli/action/add.rb
• lib/miga/cli/action/add_result.rb
• lib/miga/cli/action/archive.rb
• lib/miga/cli/action/browse.rb
• lib/miga/cli/action/classify_wf.rb
• lib/miga/cli/action/console.rb
• lib/miga/cli/action/daemon.rb
• lib/miga/cli/action/date.rb
• lib/miga/cli/action/db.rb
• lib/miga/cli/action/derep_wf.rb
• lib/miga/cli/action/doctor.rb
• lib/miga/cli/action/doctor/base.rb
• lib/miga/cli/action/doctor/databases.rb
• lib/miga/cli/action/doctor/distances.rb
• lib/miga/cli/action/doctor/operations.rb
• lib/miga/cli/action/download/base.rb
• lib/miga/cli/action/download/gtdb.rb
• lib/miga/cli/action/download/ncbi.rb
• lib/miga/cli/action/download/seqcode.rb
• lib/miga/cli/action/edit.rb
• lib/miga/cli/action/env.rb
• lib/miga/cli/action/files.rb
• lib/miga/cli/action/find.rb
• lib/miga/cli/action/generic.rb
• lib/miga/cli/action/get.rb
• lib/miga/cli/action/gtdb_get.rb
• lib/miga/cli/action/index_wf.rb
• lib/miga/cli/action/init.rb
• lib/miga/cli/action/init/daemon_helper.rb
• lib/miga/cli/action/init/files_helper.rb
• lib/miga/cli/action/lair.rb
• lib/miga/cli/action/ln.rb
• lib/miga/cli/action/ls.rb
• lib/miga/cli/action/ncbi_get.rb
• lib/miga/cli/action/new.rb
• lib/miga/cli/action/next_step.rb
• lib/miga/cli/action/option.rb
• lib/miga/cli/action/preproc_wf.rb
• lib/miga/cli/action/quality_wf.rb
• lib/miga/cli/action/rm.rb
• lib/miga/cli/action/run.rb
• lib/miga/cli/action/seqcode_get.rb
• lib/miga/cli/action/stats.rb
• lib/miga/cli/action/summary.rb
• lib/miga/cli/action/tax_dist.rb
• lib/miga/cli/action/tax_index.rb
• lib/miga/cli/action/tax_set.rb
• lib/miga/cli/action/tax_test.rb
• lib/miga/cli/action/touch.rb
• lib/miga/cli/action/wf.rb
• lib/miga/cli/base.rb
• lib/miga/cli/objects_helper.rb
• lib/miga/cli/opt_helper.rb
• lib/miga/common.rb
• lib/miga/common/base.rb
• lib/miga/common/errors.rb
• lib/miga/common/format.rb
• lib/miga/common/hooks.rb
• lib/miga/common/net.rb
• lib/miga/common/path.rb
• lib/miga/common/system_call.rb
• lib/miga/common/with_daemon.rb
• lib/miga/common/with_daemon_class.rb
• lib/miga/common/with_option.rb
• lib/miga/common/with_result.rb
• lib/miga/daemon.rb
• lib/miga/daemon/base.rb
• lib/miga/dataset.rb
• lib/miga/dataset/base.rb
• lib/miga/dataset/hooks.rb
• lib/miga/dataset/result.rb
• lib/miga/dataset/result/add.rb
• lib/miga/dataset/result/ignore.rb
• lib/miga/dataset/status.rb
• lib/miga/dataset/type.rb
• lib/miga/json.rb
• lib/miga/lair.rb
• lib/miga/metadata.rb
• lib/miga/parallel.rb
• lib/miga/project.rb
• lib/miga/project/base.rb
• lib/miga/project/dataset.rb
• lib/miga/project/hooks.rb
• lib/miga/project/result.rb
• lib/miga/remote_dataset.rb
• lib/miga/remote_dataset/base.rb
• lib/miga/remote_dataset/download.rb
• lib/miga/result.rb
• lib/miga/result/base.rb
• lib/miga/result/dates.rb
• lib/miga/result/source.rb
• lib/miga/result/stats.rb
• lib/miga/result/versions.rb
• lib/miga/sqlite.rb
• lib/miga/tax_dist.rb
• lib/miga/tax_index.rb
• lib/miga/taxonomy.rb
• lib/miga/taxonomy/base.rb
• lib/miga/version.rb