module RailsCodeAuditor

def self.run(args)
  puts "[*] Running Rails Code Auditor..."
  # Parse CLI options
  use_llm     = args.include?("--use-llm")
  model_arg   = args[args.index("--llm-model") + 1] if args.include?("--llm-model")
  endpoint_arg = args[args.index("--llm-endpoint") + 1] if args.include?("--llm-endpoint")
  format_arg = args[args.index("--format") + 1] if args.include?("--format")
  output_arg = args[args.index("--output") + 1] if args.include?("--output")
  raw_results = Analyzer.run_all
  results = ReportGenerator.normalize(raw_results)
  results[:simplecov] = SimpleCovRunner.run
  scores = if use_llm
             LlmClient.score_with_llm(results, model: model_arg || "llama3",
                                               endpoint: endpoint_arg || "http://localhost:11434/api/generate") || Scorer.score(results)
           else
             Scorer.score(results)
           end
  if format_arg == "json"
    json_output = JSON.pretty_generate({ results: results, scores: scores })
    if output_arg
      File.write(output_arg, json_output)
      puts "[✓] JSON report saved to #{output_arg}"
    else
      puts json_output
    end
    return
  end
  graphs = Grapher.generate(scores)
  html_pdf_paths = USE_GROVER ? HtmlToPdfConverter.convert_all : []
  pdf_path = PdfGenerator.generate(results, scores, graphs, html_pdf_paths)
  if output_arg
    FileUtils.mv(pdf_path, output_arg)
    puts "[✓] PDF report saved to #{output_arg}"
  else
    puts "[✓] Audit complete. PDF report generated at #{pdf_path}"
  end
end